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​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​​KPNC Authored Publications​, 2020 to December​ 2023


Pathology

Evaluation of the international Ki67 working group cut point recommendations for early breast cancer: comparison with 21-gene assay results in a large integrated health care system [PubMed Abstract] Baker, Robin J; Jing, Wen; Kapali, Malathy; Lin, Amy Y; Achacoso, Ninah S; Habel, Laurel; Lee, Catherine; Shim, Veronica C; Villasenor, Marvella A | 10/17/2023 | Breast Cancer Research And Treatment

The combined finding of HPV 16, 18, or 45 and cytologic Atypical Glandular Cells (AGC) indicates a greatly elevated risk of in situ and invasive cervical adenocarcinoma [PubMed Abstract] Lorey, Thomas S; Raine-Bennett, Tina R | 7/1/2023 | Gynecologic Oncology

Primary and Secondary Angiosarcomas of the Liver: A Multi-institutional Study of 32 Cases [PubMed Abstract] Lai, Jinping | 7/1/2023 | Human Pathology

AACC/NKF Guidance Document on Improving Equity in Chronic Kidney Disease Care [PubMed Abstract] Lorey, Thomas S | 6/28/2023 | The Journal Of Applied Laboratory Medicine

Delayed Diagnosis in a Patient with Progressive Proximal Weakness: A Clinical Vignette [PubMed Abstract] Liu, Jun | 6/1/2023 | American Journal Of Physical Medicine & Rehabilitation

Beta-HCG-Positive Pancreatic Duct Adenocarcinoma Initially Presenting with Cutaneous Metastases [PubMed Abstract] Kapali, Malathy; Lai, Jinping | 5/17/2023 | Journal Of Gastrointestinal Cancer

Effective Access to Laboratory Test Results: A Health Equity Issue that Enhances Diagnostic Excellence [PubMed Abstract] Lorey, Thomas S | 5/4/2023 | The Journal Of Applied Laboratory Medicine

Clear-cell Variant of Mucoepidermoid Carcinoma Presenting as a Palatal Mass in a 10-Year-old Boy [PubMed Abstract] Cheng, Lirong; Lai, Jinping; O'Toole, Thomas R | 2/1/2023 | AntiCancer Research

Placental Histopathologic Findings of a Large Cohort of Patients With SARS-CoV-2 Infection During Pregnancy [PubMed Abstract] Abellar, Rosanna G; Cviko-Pajt, Aida; Greenberg, Mara B; Schauer, Galen M; Forquer, Heather; Hedderson, Monique M; Kuzniewicz, Michael W | 1/25/2023 | International Journal Of Gynecological Pathology : Official Journal Of The International Society Of Gynecological Pathologists

Metabolic reprogramming and its clinical implication for liver Cancer [PubMed Abstract] Lai, Jinping | 1/3/2023 | Hepatology (Baltimore, Md.)

Metabolic reprogramming and its clinical implication for liver Cancer (HEP-22-1008) [PubMed Abstract] Lai, Jinping | 1/3/2023 | Hepatology (Baltimore, Md.)

Atypical Presentations of Collagenous Gastritis Mimicking Celiac Sprue [PubMed Abstract] Li, Xiaodong | 1/1/2023 | Case Reports In Gastrointestinal Medicine

Editorial: The role of exosomes and organokines in metabolic and endocrine disease [PubMed Abstract] Lai, Jinping | 1/1/2023 | Frontiers In Endocrinology

Ovarian Granulosa Cell Tumor Initially Presenting as a Giant Liver Mass Radiologically Mimicking Primary Cystic Cholangiocarcinoma [PubMed Abstract] Lai, Jinping | 1/1/2023 | In Vivo (Athens, Greece)

Predicting Need for Hospital Beds to Reduce Emergency Department Boarding [PubMed Abstract] Cheng, Lirong; Ellis, Willard S; Page, Mike; Tapia, Megan | 12/19/2022 | The Permanente Journal

Getting Your Laboratory on Track With Neurotrophic Receptor Tyrosine Kinase [PubMed Abstract] Rosenbaum, Jason N | 12/13/2022 | Archives Of Pathology & Laboratory Medicine

Molecular and clinicopathologic characteristics of gliomas with EP300::BCOR fusions [PubMed Abstract] Ziskin, Jennifer L | 12/1/2022 | Acta Neuropathologica

Exosomal microRNAs and Progression of Nonalcoholic Steatohepatitis (NASH) [PubMed Abstract] Lai, Jinping | 11/4/2022 | International Journal Of Molecular Sciences

Distribution of High-Sensitivity Cardiac Troponin and N-Terminal Pro-Brain Natriuretic Peptide in Healthy Transgender People [PubMed Abstract] Lorey, Thomas S | 11/1/2022 | JAMA Cardiology

Molecular Characteristics and Immunogenomic Profiling of Cholangioblastic Variant of Intrahepatic Cholangiocarcinoma in a 68-year-old Patient [PubMed Abstract] Lai, Jinping | 11/1/2022 | Anticancer Research

Proceedings From the ASCO/College of American Pathologists Immune Checkpoint Inhibitor Predictive Biomarker Summit [PubMed Abstract] Rosenbaum, Jason N | 11/1/2022 | Jco Precision Oncology

Metastatic SMARCB1 Deficient Skin Carcinoma With Neuroendocrine Differentiation in the Parotid Glands Clinically Mimicking Primary Salivary Gland Malignancy: Unusual Case With Diagnostic Pitfalls [PubMed Abstract] Lai, Jinping | 8/1/2022 | Anticancer Research

Tumor microenvironment in pancreatic ductal adenocarcinoma: Implications in immunotherapy [PubMed Abstract] Lai, Jinping | 7/21/2022 | World Journal Of Gastroenterology

A comparison of high-grade cervical abnormality risks in women living with and without human immunodeficiency virus undergoing routine cervical-cancer screening [PubMed Abstract] Lorey, Thomas S | 7/8/2022 | Preventive Medicine

Synchronous Penile Squamous Cell Carcinoma, Bladder Urothelial Carcinoma and Prostate Adenocarcinoma Diagnosed in One Procedure [PubMed Abstract] Kong, Max X; Lai, Jinping | 7/1/2022 | Anticancer Research

Pediatric Subcutaneous Scalp Mass: A Case Report and Review [PubMed Abstract] Debbaneh, Peter M; Zou, Youran | 6/29/2022 | The Permanente Journal

New insights in diagnosis and treatment of gastroenteropancreatic neuroendocrine neoplasms [PubMed Abstract] Lai, Jinping | 5/7/2022 | World Journal Of Gastroenterology

Using Natural Language Processing to Improve Discrete Data Capture From Interpretive Cervical Biopsy Diagnoses at a Large Health Care Organization [PubMed Abstract] Goldhoff, Patricia E; Grewal, Kiranjit K; Lorey, Thomas S; Wi, Soora | 4/7/2022 | Archives Of Pathology & Laboratory Medicine

Rare Case of Mixed Phenotype Acute Leukemia Presenting as a Myeloid Sarcoma Without Leukemic Involvement [PubMed Abstract] Feldman, David S; Means, Jeffrey T; Shaw, Allison J; Vu, Khoan | 4/5/2022 | The Permanente Journal

Contribution of Etiologic Cofactors to CIN3+ Risk Among Women With Human Papillomavirus-Positive Screening Test Results [PubMed Abstract] Lorey, Thomas S; Raine-Bennett, Tina R | 4/1/2022 | Journal Of Lower Genital Tract Disease

Esophageal squamous cell carcinoma with basaloid features are genetically and prognostically similar to conventional squamous cell carcinoma [PubMed Abstract] Yang, Jing | 3/28/2022 | Modern Pathology : An Official Journal Of The United States And Canadian Academy Of Pathology, Inc

Thyroid Follicular Cell-derived Carcinomas in a Background of Multiple Adenomatous Nodules Leading to a Diagnosis of PTEN Hamartoma Tumor Syndrome in an Adult Patient With a Novel RECQL4 Mutation [PubMed Abstract] Borges, Paula M; Kong, Max X; Lai, Jinping; Tay, You S | 3/1/2022 | Anticancer Research

Non-invasive detection and complementary diagnostic of liver metastases via chemokine receptor 4 imaging [PubMed Abstract] Lai, Jinping | 2/10/2022 | Cancer Gene Therapy

IgG4-related disease: Coronary arteritis masquerading as coronary "masses" [PubMed Abstract] Karmally, Serena; Lau, Richard A; Pancholy, Bharat; Pursnani, Seema K; Raparia, Kirtee | 1/8/2022 | Journal Of Cardiovascular Computed Tomography

Synchronous Basal Cell Carcinoma and Squamous Cell Carcinoma of Nasal Vestibule With Novel Unique Variants Identified by Whole-exome Sequencing [PubMed Abstract] Lai, Jinping | 1/1/2022 | In Vivo (Athens, Greece)

CNViz: An R/Shiny Application for Interactive Copy Number Variant Visualization in Cancer [PubMed Abstract] Rosenbaum, Jason N | 1/1/2022 | Journal Of Pathology Informatics

Emerging Trends in the Pathological Research of Human Papillomavirus-positive Oropharyngeal Squamous Cell Carcinoma [PubMed Abstract] Lai, Jinping | 1/1/2022 | Journal Of Clinical And Translational Pathology

Invasive Cervical Cancer After a Positive Pap Test Result and Negative Human Papillomavirus Test Result [PubMed Abstract] Fetterman B; Kinney W; Locke A; Lorey T; Shah NN; Wi S | |

Accuracy and Efficiency of Deep-Learning-Based Automation of Dual Stain Cytology in Cervical Cancer Screening [PubMed Abstract] Goldhoff PE; Grewal KK; Kingery JD; Locke A; Lorey T; Tokugawa D | |

Fetomaternal Hemorrhage: Evaluation of Recurrence Within a Large Integrated Health Care System [PubMed Abstract] Boller M; Hung Y; Moore GS; Schauer GM; Weintraub ML | |

Development of a large biorepository of cervical specimens for the Improving Risk Informed HPV Screening study (IRIS) [PubMed Abstract] Chandra M; Lorey T; Raine-Bennett TR; Varnado NE | |

The Improving Risk Informed HPV Screening (IRIS) Study: Design and Baseline Characteristics [PubMed Abstract] Chandra M; Lorey T; Raine-Bennett TR; Varnado NE | |

Survival Associated With Consolidated Multidisciplinary Care in Head and Neck Cancer: A Retrospective Cohort Study [PubMed Abstract] Aguilar JC; Blatchins MA; Meltzer C; Nguyen NT; Quesenberry CP; Sakoda LC; Wang Y; Zhang J | |

Increased Risk of Colorectal Cancer in Individuals With a History of Serrated Polyps [PubMed Abstract] Alexeeff S; Amsden LB; Corley D; Doherty AR; Fevrier HB; Herrinton L; Lee JK; Levin TR; Li D; Liu L; Raju M | |

Risk stratification for colorectal cancer in individuals with subtypes of serrated polyps [PubMed Abstract] Amsden LB; Corley D; Doherty AR; Herrinton L; Lee JK; Lei NY; Levin TR; Li D; Liu L; Raju M | |

STAT6 Monoclonal Antibody is Highly Specific for the Distinction between Solitary Fibrous Tumour and Prostatic Stromal Proliferations [PubMed Abstract] Zou Y | |

Gliomas arising in the setting of Li-Fraumeni syndrome stratify into two molecular subgroups with divergent clinicopathologic features [PubMed Abstract] Kim JY; Moes GS | |

High-grade transformation of low-grade endometrial stromal sarcomas lacking YWHAE and BCOR genetic abnormalities [PubMed Abstract] Zou Y | |

New surgical paradigm for open neural tube defects [PubMed Abstract] Moes GS; Zovickian J | |

Diagnostic Utility of a Custom 34-Gene Anchored Multiplex PCR-Based Next-Generation Sequencing Fusion Panel for the Diagnosis of Bone and Soft Tissue Neoplasms With Identification of Novel USP6 Fusion Partners in Aneurysmal Bone Cysts [PubMed Abstract] Zou Y | |

Brain and Placental Pathology in Fetal COL4A1 Related Disease [PubMed Abstract] Schauer GM | |

Congenital Myenteric Hypoganglionosis [PubMed Abstract] Han JS | |

Heterozygous NOTCH1 deletion associated with variable congenital heart defects [PubMed Abstract] Thompson ME | |

Neuregulin 1 (NRG1) fusion-positive high-grade spindle cell sarcoma: a distinct group of soft tissue tumors with metastatic potential [PubMed Abstract] Zou Y | |

Mutations in the HPV16 genome induced by APOBEC3 are associated with viral clearance [PubMed Abstract] Lorey T; Raine-Bennett TR | |

Association of HPV35 with cervical carcinogenesis among women of African ancestry: Evidence of viral-host interaction with implications for disease intervention [PubMed Abstract] Lorey T; Raine-Bennett TR | |

A Study of Partial Human Papillomavirus Genotyping in Support of the 2019 ASCCP Risk-Based Management Consensus Guidelines [PubMed Abstract] Lorey T; Raine-Bennett TR | |

Phylogenomic Analysis of Human Papillomavirus Type 31 and Cervical Carcinogenesis: A Study of 2093 Viral Genomes [PubMed Abstract] Lorey T; Raine-Bennett TR | |

Feasibility and Value of Establishing a Community-Based Virtual Multidisciplinary Sarcoma Case Conference [PubMed Abstract] Chakedis JM; Fang A; Huber RT; Lee JD; McCormick CM; Morse LJ; Pan M; Peng PD; Schwartz CM; Sidhu M; Song JI; Yu JC; Zou Y | |

Feasibility and Value of Establishing a Community-Based Virtual Multidisciplinary Sarcoma Case Conference [PubMed Abstract] Chakedis JM; Fang A; Huber RT; Kim BS; Lee JD; McCormick CM; Morse LJ; Pan M; Peng PD; Schwartz CM; Sidhu M; Song JI; Yu JC; Zou Y | |

The relationship of human papillomavirus and cytology co-testing results with endometrial and ovarian cancer diagnoses [PubMed Abstract] Locke A; Lorey T; Shah NN | |

Absolute risks of cervical precancer among women who fulfil exiting guidelines based on HPV and cytology cotesting [PubMed Abstract] Kinney W; Lorey T | |

Risk Estimates Supporting the 2019 ASCCP Risk-Based Management Consensus Guidelines [PubMed Abstract] Kinney W; Locke A; Lorey T | |

SETD2, an epigenetic tumor suppressor: a focused review on GI tumor [PubMed Abstract] Lai J | |

Laryngeal Diffuse Large B-Cell Lymphoma Presenting as Laryngeal Stenosis [PubMed Abstract] Cua DJ; Lai J | |

Merkel Cell Carcinoma Clinically Mimicking a Traumatic Suture Scar in the Nasal Vestibule: Earlier Diagnosis for Better Prognosis [PubMed Abstract] Lai J | |

Carcinosarcoma Arising from Inverted Papilloma in a Patient with History of Radiotherapy for Sinonasal Squamous Cell Carcinoma [PubMed Abstract] Lai J | |

Fibro-osseous Lesions of Paranasal Sinus and Craniofacial Region: A Retrospective Study of 282 Cases [PubMed Abstract] Lai J | |

Primary Hepatic Carcinosarcoma Composed of Hepatocellular Carcinoma, Cholangiocarcinoma, Osteosarcoma and Rhabdomyosarcoma With Poor Prognosis [PubMed Abstract] Lai J | |

Reactivation of Epstein-Barr Virus Hepatitis in T/Natural Killer (NK) Cells Mimicking Liver T/NK-Cell Lymphoma [PubMed Abstract] Lai J | |

Histologic patterns of liver injury induced by anti-PD-1 therapy [PubMed Abstract] Lai J | |

Perianal Paget's disease: a clinicopathological and immunohistochemical study of 13 cases [PubMed Abstract] Lai J | |

Disruption of hepatic one-carbon metabolism impairs mitochondrial function and enhances macrophage activity in methionine-choline-deficient mice [PubMed Abstract] Lai J | |

Synchronous Primary Pancreatic Ductal Carcinoma and Colonic Adenocarcinoma Present in a Patient With History of Skin Squamous Cell Carcinoma [PubMed Abstract] Anantharaman A; Azarm A; Lai J; Parikh PY | |

EGFR Mutated Lung Adenocarcinoma Metastasis to the Pancreas Mimicking Primary Pancreatic Ductal Carcinoma [PubMed Abstract] Azarm A; Lai J; MoezArdalan K | |

Validation of American Joint Committee on Cancer 8th edition of TNM staging in resected distal pancreatic cancer [PubMed Abstract] Lai J | |

Double Negativity for Expression of YAP1 and CDX2 Defines an Aggressive Type of Colitis-associated Cancer [PubMed Abstract] Lai J | |

Practice patterns related to prostate cancer grading: results of a 2019 Genitourinary Pathology Society clinician survey [PubMed Abstract] Kong MX | |

Small Cell Lung Carcinoma and Synchronous Rectal Adenocarcinoma and Jejunal Gastrointestinal Stromal Tumor Present in a Patient With History of Laryngeal Squamous Cell Carcinoma [PubMed Abstract] Lai J; Mortenson MM; Shiraga S | |

TROP-2, 5hmC, and IDH1 Expression in Anaplastic Thyroid Carcinoma [PubMed Abstract] Lai J | |

Yes-associated protein-1 may serve as a diagnostic marker and therapeutic target for residual/recurrent hepatocellular carcinoma post-transarterial chemoembolization☆ [PubMed Abstract] Lai J | |

Primary Ovarian Melanoma Arising From a Mature Teratoma With Melanoma In Situ Present in the Ciliated Columnar and Squamous Epithelium in a Patient With Synchronous Skin Basal Cell Carcinoma [PubMed Abstract] Azevedo RA; Lai J; Lee KY | |

Ampullitis Superimposed Obstructive Jaundice in a Patient With COVID-19 [PubMed Abstract] Lai J; Lakshminarayanan R; McCracken JD | |

Splenic-vasculature involvement is associated with poor prognosis in resected distal pancreatic cancer [PubMed Abstract] Lai J | |

Transformation from Sinonasal Seromucinous Hamartoma to Adenocarcinoma: A Case Report [PubMed Abstract] Lai J | |

Unexpected Reason for Non-healing Oral Ulcers: Syphilis [PubMed Abstract] Lai J | |

Cytologic features of hepatic YAP1-TFE3 rearranged epithelioid hemangioendothelioma [PubMed Abstract] Lai J | |

Ovarian Serous Carcinoma With a Novel HSP90AB1 Mutation in a Patient With Synchronous Primary Fallopian Tube Serous Carcinoma [PubMed Abstract] Lai J | |

Role of Yes-associated Protein-1 in Gastrointestinal Cancers and Hepatocellular Carcinoma [PubMed Abstract] Lai J | |

Common Diagnostic Challenges and Pitfalls in Genitourinary Organs, With Emphasis on Immunohistochemical and Molecular Updates [PubMed Abstract] Kong MX | |

Pathologic Diagnosis of Nonalcoholic Fatty Liver Disease [PubMed Abstract] Lai J | |

Mixed HPV-related Neuroendocrine Carcinoma and HPV-related Squamous Cell Carcinoma of the Base of Tongue in a Patient With Incidental Identification of Synchronous Metastatic Papillary Thyroid Carcinoma [PubMed Abstract] Lai J; Ledgerwood LG; Poti SM | |

Adverse Histopathologic Characteristics in Small Papillary Renal Cell Carcinomas Have Minimal Impact on Prognosis [PubMed Abstract] Serrano Correa MF | |

An upsurge of the serum free light chains as a possible missing link in tumour lysis syndrome in multiple myeloma [PubMed Abstract] Baker RJ; Jing W; Yavorkovsky LL | |

Bilateral auricular lymphoplasmacytic lymphoma: barely mere coincidence [PubMed Abstract] Lee AT; Tang Z; Yavorkovsky LL | |

Pulmonary Pathology Society Perspective on the 2018 American Thoracic Society, European Respiratory Society, Japanese Respiratory Society, and Latin American Thoracic Society (ATS/ERS/JRS/ALAT) Idiopathic Pulmonary Fibrosis Clinical Practice Guidelines [PubMed Abstract] Raparia K | |

Dual blockade of CD47 and HER2 eliminates radioresistant breast cancer cells [PubMed Abstract] Zhang Y | |

Cutaneous eyelid melanoma in an African American child [PubMed Abstract] Choi CJ; Khararjian A | |

DEK-AFF2 Carcinoma of the Sinonasal Region and Skull Base: Detailed Clinicopathologic Characterization of a Distinctive Entity [PubMed Abstract] Khararjian A | |

 
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